Protein Info for MPMX19_00071 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 933 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 341 to 360 (20 residues), see Phobius details PF08269: dCache_2" amino acids 34 to 330 (297 residues), 179.5 bits, see alignment E=3.9e-56 PF17200: sCache_2" amino acids 73 to 217 (145 residues), 100.6 bits, see alignment E=3.8e-32 amino acids 220 to 331 (112 residues), 64.8 bits, see alignment E=4.1e-21 PF17201: Cache_3-Cache_2" amino acids 220 to 330 (111 residues), 50.2 bits, see alignment E=1e-16 PF00672: HAMP" amino acids 360 to 410 (51 residues), 46.5 bits, see alignment 1.7e-15 TIGR00229: PAS domain S-box protein" amino acids 428 to 558 (131 residues), 28.4 bits, see alignment E=7.5e-11 PF00989: PAS" amino acids 434 to 527 (94 residues), 24.2 bits, see alignment E=1.3e-08 PF08448: PAS_4" amino acids 437 to 552 (116 residues), 48.2 bits, see alignment E=5.2e-16 PF00512: HisKA" amino acids 568 to 630 (63 residues), 28.1 bits, see alignment 8e-10 PF02518: HATPase_c" amino acids 674 to 792 (119 residues), 65.5 bits, see alignment E=2.5e-21 PF00072: Response_reg" amino acids 819 to 924 (106 residues), 52.4 bits, see alignment E=2.6e-17

Best Hits

KEGG orthology group: None (inferred from 92% identity to azl:AZL_026110)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (933 amino acids)

>MPMX19_00071 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MIRSPLFLRLFSAILISLGLFSAAAYVFSVPFIEEKAYEIERDASRTILDNVFELVSRIR
GGLEEQRVATVDSYKTRLRDVLELAVGYIEHVYARADRGEITMEQARREAMEGLHAFRYG
NGDYVWAIGYDSVILSHPSPDYQGRKADDLRDNLGRHILPTIVATAKREGEGFQTYPWWR
PNGDERAPKLSFFKDLPRRGIIVGTGAYLADVDAEVERRKADAIEDLRQALRKLRIARTG
YLYIFDSANRMIIHPNSNIEGTAFGDRLNSATGRPIAEDLKVAAAKGEPLTYLWDKPDDP
GNYAYEKISWVRHFEGFDWYIASSVYVDELRRSSVVLGNRILAIGMALMAAGSLLGYIAV
GRLVRPLRRLADTAVQVRAGDLGAQSGIRRGDEIGLLASAFDGMVRQLRDTVATLDSRVR
DRTAALAEAETRQRVILDAIPACIAGLDRDGRLTFANLRWAELVGRDKAAVIGRDLASVV
GRRAMAALAPHLDRCLSGEVVTFEYAFPRHGGTIVTKTTLIPHRGEGRGEGRAEEGAVTG
LFVLTLDITDEKQTERQLVEAQRLKAVGQLSGGLAHDFNNLLSIIIGNLSAARDRYAAVE
GLDAYLEPAQRAGRRGADITARLLAFSRQQPLKPEPIELCGLLRDMAVLLRRSFPSSIAI
GVPGEGRECWTIADQTQLENALVNLAINARDAMPNGGRLDIAVGIRKVEGDQSFDEPVHS
DDYLEIRVTDTGTGFTPEALARAVEPFFTTKALGSGLGLSMVYGFVKQSRGYLRIDSRPG
EGTAVTLLLPRAEPVPRLQEADLAAAEPQPGGWSGQLALVAEDNDDVRQVMRQQLVDLGF
SVVEAASGDEAAELVEQIDGLSLLVSDIVMPGLSGVELARRARLLRPTMRVVLVSGFAVE
YGDVPADAVILRKPWDKRELVAAIGHAAEPAPA