Protein Info for MPMX19_00067 in Azospirillum sp. SherDot2

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 706 transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 295 to 315 (21 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 326 to 453 (128 residues), 54.3 bits, see alignment E=7.3e-19 PF08448: PAS_4" amino acids 336 to 447 (112 residues), 50.8 bits, see alignment E=4.7e-17 PF00989: PAS" amino acids 343 to 443 (101 residues), 27.2 bits, see alignment E=8.3e-10 PF13426: PAS_9" amino acids 345 to 445 (101 residues), 33.6 bits, see alignment E=1e-11 PF00512: HisKA" amino acids 466 to 535 (70 residues), 65.7 bits, see alignment E=7.9e-22 PF02518: HATPase_c" amino acids 582 to 693 (112 residues), 106.4 bits, see alignment E=2.8e-34

Best Hits

KEGG orthology group: None (inferred from 86% identity to azl:AZL_026150)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (706 amino acids)

>MPMX19_00067 Sensor histidine kinase RcsC (Azospirillum sp. SherDot2)
MTDLSEPDGGARGTWWRLSALPPVAALRIGLLVAVIAGFWLVAYADLERARDRAIHDGLR
QTANLSTLLEEDARRVMIVADHALRATAAEGTIPAYLVGETAGALGSTTGPGPALRNLMI
VERDGRVRQAAGLHKPAHVADSPLAEALMGESRAFVGPYREADGGWRAAMIRPLANGSAM
AVAVLDLDRFARLYATQDIGPLSIILFYGENGVVLSHSRSGMRALDENRAFFASVLPRLP
AGENARTLSGLDPTEGRERIGTVRRVAGWPLYVYVRIRTEDVLAGWYDDRWKRILETAAV
SVVVLLLACLALRQLGRLETTTQALRASERRSQALFDSSFQIMGLLAPDGRVLALNRPAC
ALAGLPAEALVGHRAWEFRGWARTDELAAAFRQSIEKAASGRFVRYETDVVADGLTRVMD
VTIKPVYDDGGVVTVLVVEARDITERVEAAERLATALDQAEAANRAKSAFLATMSHELRT
PLNAIIGFSDIMLHELFGPLGSPRYRDYARHVQNSGRHLLDLINDVLDMSKLEAGRYTLD
ESWMEPAEAIETCRALAAVPADVGGVTLAVECPPDLPNLLADERALRQVLLNLLSNAVKF
TPRGGRVTVSAVREGDGRIAITVRDTGIGIAADALARILEPFQQADSSISGRFGGTGLGL
SICRDLMALHGGSLSIDSEPGLGTAATIRFPADRTGRPVAVDGLPA