Protein Info for MPMX19_00059 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 176 transmembrane" amino acids 17 to 34 (18 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 140 to 162 (23 residues), see Phobius details PF03073: TspO_MBR" amino acids 45 to 157 (113 residues), 44.2 bits, see alignment E=8.3e-16

Best Hits

KEGG orthology group: K07185, tryptophan-rich sensory protein (inferred from 86% identity to azl:AZL_026210)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (176 amino acids)

>MPMX19_00059 hypothetical protein (Azospirillum sp. SherDot2)
MSDATYTAPPPTPFRVRWWQPLLFWVIVNAWGFVERGGQPFAGHHPSPLQPPGWVFPVMW
FTLNVFQIWGDIRLIDPARPLRSRGLLIGLQAVTWVIYATFSLVYFTLGSSILAAAWTVC
FFVITSICIALVGRDDRSIALIWTPLILWTGFASVVGIHNALINPDPLFGTPALWG