Protein Info for MPMX19_00022 in Azospirillum sp. SherDot2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 PF04055: Radical_SAM" amino acids 76 to 255 (180 residues), 55.2 bits, see alignment E=5.2e-19

Best Hits

KEGG orthology group: None (inferred from 90% identity to azl:AZL_026530)

Predicted SEED Role

"Radical SAM domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (363 amino acids)

>MPMX19_00022 hypothetical protein (Azospirillum sp. SherDot2)
MDEIRRSPIKGRGAVSNVTGRFERETRVLTDDGWTGYAESGNEALSDPVRTSVSPASAKS
IITGNQSPDIPFDRSVNPYQGCEHACIYCFARPTHAYLGLSPGLDFETRLFAKRNAAELL
AKELRAKSYVCQPLALGANTDPYQPIERTEGITRRVLEVCRDFNQPVSIITKSALVLRDL
DILAPMAAQGLASVAVSVTTLDRDLARTMEPRASTPPRRLEAIRALSESCVPVAVLASPM
IPALNDHELEAILEAAAGAGATAANYILLRLPLEIASLFEEWLRVHAPNRADRVLSLMRQ
SRDGALYRSGFGTRMKGSGPYAELLRHRFKLACRKHGLGGRSWQLDCSRFRVPPAAGDQL
SLL