Protein Info for MPMX19_00010 in Azospirillum sp. SherDot2

Annotation: Transcriptional regulatory protein OmpR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 PF00072: Response_reg" amino acids 8 to 119 (112 residues), 110 bits, see alignment E=7.1e-36 PF00486: Trans_reg_C" amino acids 163 to 236 (74 residues), 82.2 bits, see alignment E=2.4e-27

Best Hits

Swiss-Prot: 53% identical to OMPR_ECO57: Transcriptional regulatory protein OmpR (ompR) from Escherichia coli O157:H7

KEGG orthology group: K02483, two-component system, OmpR family, response regulator (inferred from 93% identity to azl:AZL_026620)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (247 amino acids)

>MPMX19_00010 Transcriptional regulatory protein OmpR (Azospirillum sp. SherDot2)
MDRTPHLLVVDDDREIRSLVAQFLTKHGFRVTGVRDGAEMMRTLDGARVDLIVLDLMLPG
EDGLSLCRRLRATPQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKA
VLRRVSAPPVAGAPAAAGTVLRFEGWSLDLTKRELRSPDGVLVQLSAGEYDLLVAFVEHP
QRVLTRDQLLDLARGRSAVPFDRSIDVQVSRLRRKIEPDPADPTLIKTVRGGGYLFTPTV
SNGGVAP