Protein Info for MIT1002_04077 in Alteromonas macleodii MIT1002

Annotation: Superfamily II helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 574 PF06048: DUF927" amino acids 13 to 275 (263 residues), 213.8 bits, see alignment E=2.1e-67

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (574 amino acids)

>MIT1002_04077 Superfamily II helicase (Alteromonas macleodii MIT1002)
MLKAKVDGIYTLNKDGEERKISGPIEVKAIVSSPDKRDDFGRLIEWKNYFGLSIREVLPM
GEVDDYSAKKFKKRLLNSGFELSTKKFSWDSLLSYLIEYPCSEHAITAKQSGWVDRQFIT
PDWTVGEATTPAVYVGDFAGANLSEAGTLAEWQQQVGSYCRDNPILILSVCCALAAPLIE
WTGIESFGVQIVGASKTGKSTAMKVAASVYSDQTYCESWSSTANGLESIARARNNMLLCL
DEFKQCPEQEMDRLVYHLCNGVSKLRSEKDGSLGKRYRWNTIFLSTGEITLKQLLHENNK
TVSAGQMVRFLDIPTFGAFDVFENIHEFSSPKEFAEHLGSATRKYFGTLAKAWVKILSSL
NFPQDEVIKEYKRIREDWPWKKDIGSQANNVLDKLALLAAAGEIATNYGLLPWHLGDAKN
ALKQVAVVWLDDRDGTENAENKKLTEDILKLIKKWRHSLSSKEEWNDSFIGMFEFDQELV
WYIPQQILKTEVNQPNKQIYSKVRELMWKKGWLSSNEPDRRTFKIGSKRFFKLFPEKVCR
ECGESVDLSHFYPNDKALNSNANPTFPVSQRENY