Protein Info for MIT1002_04048 in Alteromonas macleodii MIT1002

Annotation: Autotransporter assembly factor TamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 612 signal peptide" amino acids 1 to 49 (49 residues), see Phobius details PF17243: POTRA_TamA_1" amino acids 54 to 123 (70 residues), 45.9 bits, see alignment E=7.5e-16 PF01103: Omp85" amino acids 294 to 595 (302 residues), 121.5 bits, see alignment E=9.1e-39

Best Hits

KEGG orthology group: K07278, outer membrane protein (inferred from 87% identity to amc:MADE_04024)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (612 amino acids)

>MIT1002_04048 Autotransporter assembly factor TamA (Alteromonas macleodii MIT1002)
MPSIWSGLASLQDHLFRQFMFRITKAVRVLVGGTLCTLACALFTFSHAQDPISYNIQGVE
DDKLRNNIRLHLNSLDVEKSLLTDPYWQDEVGETVATAVQPYGYYNSETKVSIEEGDKVT
VNVALNAPLTINKVTREIIGAGREDKAFRERFNSLKLKEGDVLNQTIYESFKSSMFNYAL
SNGYFDYFWQATRLDLVRDEKQANVLLIAQSGPQYQFGELKFIGDDKAKAIIERLKPFKT
GDAYSSATLADFNRSLNQSGYFTRVIARPVVSEADGLLVPVEVSLLHRPTDAFNVSVGAA
TDTGPRVRLGWERPWVNSKGHSVSSDIFISAPEQSVTADYRIPMRNITRDYASIEAGYQF
IEYSNTSFESETLSLSAHRYWQHDNSPWQHDGSVTYLRETYDQGELSTNTTSLVLPGYSL
TYRDKDSELNINNGTYLQMLTQIGREGYGSDIDFAKAVVEATLIRTFNNVHRITIRGEAG
VIKTNSFDEVPTSLRFYAGGDKSVRGFDYREISPTAEVIDPETGELIVDSIGGKYLATSS
VEYAYQVADNWRVAAFVDAGTATNDTSTTLTYSVGPGVHWLSPIGPVRLYVARGFAPDEN
TWQLHILLGPEL