Protein Info for MIT1002_04037 in Alteromonas macleodii MIT1002

Annotation: FG-GAP repeat

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1186 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1186 amino acids)

>MIT1002_04037 FG-GAP repeat (Alteromonas macleodii MIT1002)
MKTSRLGFSGLFSLLALTACGGGGGSDSSPPTNPPPPPEPTALEILSNPLDYSESRLNSA
ATTYADANYSGETKVSTVDISAVQEVYITLFGDNTSGSPYVDQYDIYTFLDENGNVEGTT
ECYESGSVTYSGKLDEDTGKGTITVDYDQCIQYYDSTRYDGQFSLVITDAGENSSEVTSY
FTTLSMLDGGVRTTLKGYLSVDFRYRPQTGTFYEETRQYLTVTHNGETYKVSGTSAEGVT
NNTFVSELNGSIYIASKGKLDFAYSSDQGDLPYSSSGSLVVKGDKTAGIDVIDGAVRYGE
DNNGDDIYDVGVYFNNLTAFASGNHTGLALSDIDAISVPPVVNQPYYYAYETVYTTDEVT
VEPGYYHDSDTPDSELVISFRWYVNGVVLDDVNGTTLPPYSAVFGDEVKVTMVVSDGINV
VESQPTFVEIGNSPMTLTASNMPEVVTAGGYVEFTVSMSDPDRVDDDVAGELISAPPGAS
LNAEGLMTWNVPANQLFNAQTYMFSFASLDGTESQQTLEITSYADKAPAYARTTVMTPIY
NHGFAIASTNGVSELITVNARNVGAFSLEGNTLKNTYVYPYKLPTKGEIRSVHTQDVDGD
NNDEIYLLTQQGLSVIKDRESNAEAVFIIEDSIISGLFYDINGDGVDEVAYLYGSEYYNA
TSIAIVDVRTGEQLQQYDIDGVNNLAFGNVDDDASIEMVTNNGYVFDIGSGANQWLYGSG
FSDAFVVLGDMNNDGVDEIIGADSWNDISIYSAVSKSSLATAEHGDICDIAYSKESPATE
GIVVVSECQWGQVRGFALEAGQISEQWALNHNTYSGMSLLIDDLDNDNVDDIIWTGENQI
LVAQQDANGEYALSDIKGAPRASRYHAAGWAPYGDNDERAVFVSDTSSYESSIQILSVDK
EDNFAISAEVGEDVYNYSKPVVTDYNNDGVGELLIGALDYSSSFNVVRLTDNAIQWTLNN
NQNSEISFIEAIDVNNDSYADAVIIENNRLKAFDIENQVLIDSIINDFSINALAASEKDG
VHYFAVGGYSSLKLYKMQDGEFVGLNELETNCDQLLTVNFDSDSELEFACLNRNYNTINV
YDVASDALELKDAIAPSFYPQYIAAVPTTSSNQSILAIYQPNENDYSYNYYDSIAYRVVE
VDNKGNVVWQSPGLGLDNVEGMRTRQNSDGELELQISNPNMALLVK