Protein Info for MIT1002_04008 in Alteromonas macleodii MIT1002

Annotation: putative transposase OrfB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 PF00665: rve" amino acids 93 to 188 (96 residues), 60.4 bits, see alignment E=2.8e-20 PF13683: rve_3" amino acids 176 to 241 (66 residues), 54.3 bits, see alignment E=1.3e-18 PF13333: rve_2" amino acids 198 to 242 (45 residues), 23.6 bits, see alignment 6.9e-09

Best Hits

KEGG orthology group: None (inferred from 86% identity to sbn:Sbal195_1380)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>MIT1002_04008 putative transposase OrfB (Alteromonas macleodii MIT1002)
MECRRAELSIIKEWVLYWRKYMPKIGTRKLYTLIKPKLVEHGIKLGRDGFFTYLKSEGLL
VKPKKSFTKTTFSKHWMKKHPNLLKEEGLHNAEHVLVSDITYLESDQGVHYLSLVTDSST
RKIVGHHLSLDMRAENVVKALKMAVKDKRYAGNSVHHSDRGLQYCSAIYQNELNANGIQP
SMTDGYDCYQNALAERINGILKQEFLLYRCKTIEELKILVTESINIYNEMRPHLALDMET
PNAVHNRKGQLRELA