Protein Info for MIT1002_03836 in Alteromonas macleodii MIT1002

Annotation: Glucan endo-1,3-beta-glucosidase A1 precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 893 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF00722: Glyco_hydro_16" amino acids 83 to 275 (193 residues), 79.5 bits, see alignment E=2.2e-26

Best Hits

KEGG orthology group: None (inferred from 82% identity to alt:ambt_20145)

Predicted SEED Role

"Beta-glucanase precursor (EC 3.2.1.73)" in subsystem Beta-Glucoside Metabolism (EC 3.2.1.73)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.73

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (893 amino acids)

>MIT1002_03836 Glucan endo-1,3-beta-glucosidase A1 precursor (Alteromonas macleodii MIT1002)
MTKKASQLSRIAAAISVATLFGCGGGATTSTDIDVVDPAAPVSDWELVWSDEFDGNSIDD
DNWTHEVNCDGGGNNESQCYTDSEDNSFVSDGSLKIVALPAEEGAQKPYTSARLNTRYKA
DFKYGRIEMRAKLPSGQGSWPAFWMMPTDEVYGGWPRSGEIDIMEAVNLKALDADGNPES
HIHGTLHYGQEWPNNDSSGKAYSLPDGANPADDFHTYAVEWQEGEIRWYMDDYLYATQRR
SEVRYNANGDATGLSHRGWYAEYFEQGTGELTTHWDNAPFDQEFYIILNFAVGGDWPANV
NETGIDAEAFVEGQTYEVDYVRVYECASNPDTGKGCETVRPGYNSLDDALVEGEAPIPSP
PSTGVAQNLTIFDGTPNPNWPAWDCCGGSTPALVEDAEQGQVFEFAINETPTVMGFISRA
QFITDPEGEASPFDASPMEETGSVKFDLKVTSLPANAITNWLFKIESSEGSTAAELPLMD
GYVGPADTAGAAPEQGVWESYEFPLSALAAAGLDTSAIDVIMVFPAWDTGNGAVYRMANV
EISQEGGASYPELVIFEDGQNPNWPMWDCCGGSTPTEEMDNEEHGLTAEFRIGAEPTVMG
FITRPESGGGDTPFDATALTDGGLLQFDMRVVSAPSNAEASWIFKIESNGASTAVELPLS
DSVEGQEPVEGEWQTYTFTISELQARGLDVSAIDVIMVFPAWDTGEGAVYRLDNVKFYHP
DSGEDASGAGITLFADTAAEQWSIWDCCGGSTPTEEVDDAEHGTVAEFRIGATPTVMGFL
ADETVSFDASSLLSNGAIKFEMKVSSMPNDASAPWLFKVESINVSSAVELPMSASLEGAH
PVEGEWQTYTFPLQTLYDAGLDISAINVIMMFPAWGQGEGAVYRIDNVEIAAQ