Protein Info for MIT1002_03815 in Alteromonas macleodii MIT1002

Annotation: Cation efflux system protein CzcA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1061 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 335 to 357 (23 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 391 to 412 (22 residues), see Phobius details amino acids 447 to 468 (22 residues), see Phobius details amino acids 480 to 504 (25 residues), see Phobius details amino acids 538 to 557 (20 residues), see Phobius details amino acids 862 to 883 (22 residues), see Phobius details amino acids 890 to 914 (25 residues), see Phobius details amino acids 920 to 941 (22 residues), see Phobius details amino acids 969 to 986 (18 residues), see Phobius details amino acids 993 to 1016 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1021 (1015 residues), 588.2 bits, see alignment E=2.9e-180 PF03176: MMPL" amino acids 863 to 1026 (164 residues), 27.4 bits, see alignment E=1.7e-10

Best Hits

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1061 amino acids)

>MIT1002_03815 Cation efflux system protein CzcA (Alteromonas macleodii MIT1002)
MDITKQAIKNATGVGIGITLLVFLGLYSLFNLPVQLFPDIERPNINIQTSWRAASPQEIE
SEIIEPQEEVLQGIPGLESMNAWANQGNAWINLEFGLDTDMQKTLIEVISRMNRVPPLPR
DALSPNIMLAGSGGDAPALTYFFLQRLPGNPNEINTYVTFFTDVIKPQLESIPGVARARM
ESGVGGVEEFQIVFDPFKAAQLGIDLTAVANELGRANDISGGFVDVGRRRYTLRFEGRYE
PTQMGEMILEWRDGSPITLNDIAEIKITRADGANYSVQNGNPAISIRVDRQNNANVLATL
EAVKAKVAQINEQDLAPEQLVMAQSFDASVFIYRAVQLVTSNLFIGVLLAIAVLWLFMRQ
LRATLIVALAIPISLLSTFVVLQLTGRSLNIISLAGLAFAVGMVLDAAIVVLENIVRTRK
SAEAEIENKDPHSQTHMEDCAHRGTKGVFGALMASTATTVAIFIPVMFLEDVEGQLFADL
ALTIAIAVCMSLVVAVTVLPVVAARYLNGNMPADSLQRVWAKITRAIMSLSSTPLRRLVL
VITLMGVPITGSVLLMPSMDYLPPVKRDAVDAFLSLPAGASENFISEEVMPIIVERLQPY
MDGEKQPALKNYYIITWPNGGNLGVRAKDQSKVKELEAIVRDEILKDLPDTQTFSQQGNL
FGGFGNGRSIDIHLQGTDQAMLGIAAQAGLDKLREVFPNANARSNPPLEQAEPELRFYPN
DSRMMEVGLNRGSMGNLVRAMGDGMYVGEYFDGTKRMNIIFRSAPWFTPEDLNSTPVMTP
SGEVVQLGELVGIERAVGPSRIQRIDGRRTLTLNVNPPEGMSLEEAMKVITSEVEPAIMA
MMPTDGAINYGGSADSLKGAIASMADNFLFAMVLLLLLMAGLFKSLKDSVLVVLSIPLAT
VGGVIAIRIMNIFTFQPMDLLTMIGFIILLGLVVNNAILLVHQTRIGEQEGLTRDDAVEQ
AIKLRLRPIFMSTLTSIFGMLPLLLLPGAGSVIYRGLAAVIVGGMTVSTIFTLLLLPTLL
RMTASKSPVNILKPLAERIESTGASPTTSSTVKQNKYNDHV