Protein Info for MIT1002_03784 in Alteromonas macleodii MIT1002

Annotation: PABA-GLU transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 transmembrane" amino acids 39 to 62 (24 residues), see Phobius details amino acids 95 to 121 (27 residues), see Phobius details amino acids 142 to 170 (29 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 231 to 249 (19 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 323 to 343 (21 residues), see Phobius details amino acids 364 to 385 (22 residues), see Phobius details amino acids 403 to 425 (23 residues), see Phobius details amino acids 432 to 450 (19 residues), see Phobius details amino acids 462 to 482 (21 residues), see Phobius details amino acids 494 to 518 (25 residues), see Phobius details PF03806: ABG_transport" amino acids 23 to 531 (509 residues), 711.5 bits, see alignment E=4.4e-218 PF03606: DcuC" amino acids 144 to 482 (339 residues), 25.7 bits, see alignment E=4.1e-10

Best Hits

KEGG orthology group: K12942, aminobenzoyl-glutamate transport protein (inferred from 98% identity to amc:MADE_00653)

Predicted SEED Role

"Multidrug efflux pump component MtrF" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (533 amino acids)

>MIT1002_03784 PABA-GLU transport protein (Alteromonas macleodii MIT1002)
MTTENTNSVSADDRGGQGGLFSRFLATVEWLGNLLPHPVTLFALLSLFIVLLSGILGYFD
LAVVDPRPVGAKGREEDGMIEVISLMSAEGLQRIVTGLVTNFTGFAPLGTVLVALLGVSV
AEHSGLLSAAMRALVMNASKRAVTFAIVFAGIISNTASELGYVVLIPLAAMIFHSLGRHP
LAGLAAAFAGVSAGYSANLLLGTVDPLLSGITEAAAHMIDPDYMVGPEVNWYFMFISTFV
VATMGALVTEKVVEPRLGKFDPADASIDLGKQSMDAPTDLEKKGLRWAGISFVIVCAILA
LTVVPENGILRHPETGEVAGSPFLKGIVAFIFITFAIPGFVYGKVTKSMKNDKDVIDAMS
KSMGAMGLYITLVFFAAQFVAFFKWTNLGTVLAVKGAAALQAAGLDGPAVFILFILMCGV
VNLSLGSASAQWAVTAPIFVPMLMLIGYAPEVIQAAYRIGDSVTNVIAPMMSYFGLILAM
AARYKKDLGMGTLIAMMLPYSMVFIVGWTILFYIWVFLLGMPVGPGAATYYQP