Protein Info for MIT1002_03420 in Alteromonas macleodii MIT1002

Annotation: putative acyltransferase YihG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 transmembrane" amino acids 9 to 35 (27 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 122 to 140 (19 residues), see Phobius details PF01553: Acyltransferase" amino acids 75 to 214 (140 residues), 60.2 bits, see alignment E=9.5e-21

Best Hits

KEGG orthology group: None (inferred from 92% identity to amc:MADE_03628)

Predicted SEED Role

"Acyltransferase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>MIT1002_03420 putative acyltransferase YihG (Alteromonas macleodii MIT1002)
MVKALLHHIVGTISVICYFVNTVVWSTPIFILAIFKLIPIAPWRRFISYLLDACATAWIG
VNNLNQRISGRTKWQINGLEKLTRDDWYLVVANHQSWVDILVLQRVFNRRIPFLKFFLKK
ELIYVPILGLAWWALDFPFMRRYSKSFLAKNPHLKGKDMETTRQACEKFRNKPVSIMNFV
EGTRFTQAKHDKQASPFTHLLKPKAGGIAFVLSAMGDHLHKLIDVTIDYPNGVPSFWDFV
SGKVRDIRVNINVMPIKDIMENGIFDDNYFDDPQVRARFQTWLNERWHAKDQLLDSLNAT
QKPL