Protein Info for MIT1002_03233 in Alteromonas macleodii MIT1002

Annotation: Group II intron-encoded protein LtrA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 TIGR04416: group II intron reverse transcriptase/maturase" amino acids 34 to 401 (368 residues), 349.9 bits, see alignment E=8.2e-109 PF00078: RVT_1" amino acids 87 to 315 (229 residues), 123.7 bits, see alignment E=4.2e-40

Best Hits

KEGG orthology group: None (inferred from 40% identity to wri:WRi_010330)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (431 amino acids)

>MIT1002_03233 Group II intron-encoded protein LtrA (Alteromonas macleodii MIT1002)
MIVSTKQQQIAKLAKEKPKLVFTSLNHLLNIEWLYEAYRLTRKDGAVGIDGETARDYEQH
LDANLQSLLERVKSGRYRAPAIRRVYIPKGDGKLRPLGIPTFEDKLVQRAVVMLLEPVYE
QTFYDCSFGFRPGYSAHQALQSLRNHIMDDGGKWVLDVDIQQYFDTIEHTQLRNFLDQRV
TDGVIRKMIDKWLKAGVMDGSKLKKSVIGTPQGGVISPLLANIYLHYVLDEWFANSVKPR
MLGRSSLTRFADDFVMVFEHYEDCYRVQQVLTKRFTRYGLTLHPDKTRRVDFRFRYRKTN
VQRGKCVNFDFLGFTHYWGRSRRGHFVVCQKTAKNRLARTLKAFNVLCQKMRHKPLDLQW
EWLNRRLVGHYVYFGITGNGKSLKRLHHKVERLWHKWLGRRSRKSYIPWARFTLLLKRFP
LAIPRIYHRYV