Protein Info for MIT1002_03072 in Alteromonas macleodii MIT1002

Annotation: putative L-valine exporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 113 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details amino acids 46 to 64 (19 residues), see Phobius details amino acids 70 to 87 (18 residues), see Phobius details amino acids 94 to 112 (19 residues), see Phobius details PF05437: AzlD" amino acids 5 to 107 (103 residues), 40.1 bits, see alignment E=1.7e-14

Best Hits

KEGG orthology group: None (inferred from 82% identity to amc:MADE_03311)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (113 amino acids)

>MIT1002_03072 putative L-valine exporter (Alteromonas macleodii MIT1002)
MHVDIWIAIVVAAIGTYALRVVPLLWTQRHFNKHKANNTEARLPTWLSVLGPLMIAAMLG
ASLIPKAPSAASWIATAIGTVVTVLVWRKFKSLGLPVFCGVLSFGVAFGIALV