Protein Info for MIT1002_02998 in Alteromonas macleodii MIT1002

Annotation: Efflux pump membrane transporter BepE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1040 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 368 to 388 (21 residues), see Phobius details amino acids 395 to 418 (24 residues), see Phobius details amino acids 439 to 460 (22 residues), see Phobius details amino acids 471 to 497 (27 residues), see Phobius details amino acids 542 to 564 (23 residues), see Phobius details amino acids 877 to 898 (22 residues), see Phobius details amino acids 905 to 927 (23 residues), see Phobius details amino acids 933 to 956 (24 residues), see Phobius details amino acids 978 to 998 (21 residues), see Phobius details amino acids 1010 to 1036 (27 residues), see Phobius details PF00873: ACR_tran" amino acids 3 to 1036 (1034 residues), 1170.3 bits, see alignment E=0 TIGR00915: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family" amino acids 4 to 1038 (1035 residues), 1127.7 bits, see alignment E=0 PF03176: MMPL" amino acids 306 to 497 (192 residues), 38.1 bits, see alignment E=1.4e-13 PF02355: SecD_SecF" amino acids 341 to 496 (156 residues), 25.7 bits, see alignment E=1.1e-09

Best Hits

KEGG orthology group: None (inferred from 92% identity to amc:MADE_03217)

Predicted SEED Role

"RND efflux system, inner membrane transporter CmeB" in subsystem Multidrug Resistance Efflux Pumps or Multidrug efflux pump in Campylobacter jejuni (CmeABC operon)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1040 amino acids)

>MIT1002_02998 Efflux pump membrane transporter BepE (Alteromonas macleodii MIT1002)
MNISQFFISRPIFAGVLSLLIFIGGAIAVWQLPITEYPEVMPPTVVVTANYPGANPEVIA
ETVATPLEQEINGVENMLYMSSQATSDGRMTLTITFAIGTDPDEATTLVQNRVNRATPRL
PQEVQRLGVVTEKSSPDLTMVVHLTSPDNRYDMLYLSNYADQFVKDELVRINGVGQVRLF
GAGEFSMRVWLDPNKLAALQLNPGDVAAAIADQNQQAAAGSLGAQPTGTSEFQLLINVRG
RLKDEAEFENIIVKSGENGEITRLKDVARIELGSEFYALRSLINNNPAAAVPVFQAPGSN
AIQISDDVRARMAELSKAFPEGLEYEIAYDPTVFVRGSIEAVISTLLEAVLLVVLVVVLF
LQTWRASIIPLVAVPISLVGTFAFMQLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVER
NISEGKAPFEATVQAMKEVTGPIIATTLVLAAVFVPTAFMSGLTGQFYKQFALTITISTV
ISAINSLTLSPALSALLLKPHGKANDWLTRLMDKVFGRFVFSPFNRFFDRNSKRYTGAVG
GLIRKSSIIMVLYAGLLGLTYFQFANTPTGYVPPQDKQYLVAFAQLPNAASLDRTEEVIR
EMSRIAMEHPGVEDAIAYPGLNINGLTNSPSSGVLIATLTDFDKRTTPDLSGGAIAAQLN
QNFGSIKGAFVAIFPPPPVMGLGTIGGFRLQVEDRGNLGFEELERVTQEVIGKAWAHPAL
TDAFTSFTVAVPQLDVDVDREKAVSQGVNIDTLFTTMQGYLGSLYVNDFNLFGRTYQVNV
QADAQYRQDIENITQFKVRNAQGEMIPLGSFLNIEHSAGPDRVMHYNGYVTAEINGAAAP
GYSSDQAKAAIEEILAETLPLGMTYEWTEITYQQILAGNASAFVFPLVVLLVFLVLAAQY
ESLRLPLAIILIVPMTLLSALIGVQVYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKEL
QDKGMDALSAIKEASRLRLRPILMTSIAFIMGVLPMAVSTGAGSEMRQAMGVAVFSGMIG
VTVFGLILTPVFYYLIQRKG