Protein Info for MIT1002_02935 in Alteromonas macleodii MIT1002

Annotation: Glutathione transport system permease protein GsiC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 transmembrane" amino acids 9 to 27 (19 residues), see Phobius details amino acids 102 to 127 (26 residues), see Phobius details amino acids 148 to 173 (26 residues), see Phobius details amino acids 185 to 203 (19 residues), see Phobius details amino acids 244 to 271 (28 residues), see Phobius details amino acids 289 to 311 (23 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 77 (77 residues), 25.1 bits, see alignment E=1.7e-09 PF00528: BPD_transp_1" amino acids 122 to 320 (199 residues), 118.8 bits, see alignment E=2.5e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (327 amino acids)

>MIT1002_02935 Glutathione transport system permease protein GsiC (Alteromonas macleodii MIT1002)
MRKILLQRLLQAVLMAWSVGTLTFIITRSLPGDMAYKIAAGRYGDDAVSTSAANAVAEEL
GLHRSAFEQYVSWMTDLASLDLGKSLVTGAPIVVELQNQLSYTLVLAGLAILVSALIAFP
LGIYSGIRSARKSENTPKSRASLFDKTALVFSTFVRSQPVFCLGLILIFIFALELNWLPV
AGSSGFVYTILPVMTLGLSLAAISNRVIRNSTVNAVQSGYFHFAKIKGLSALEAFGCHAL
PNIVIPALAFMGIQLIGLIEGVIMIESLFAWPGIGHGLSHAVFARDITMLQGTALLMGML
FVLVNTLVDLSQYALDPRVRENRGYSQ