Protein Info for MIT1002_02915 in Alteromonas macleodii MIT1002

Annotation: Metallopeptidase family M24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 447 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00557: Peptidase_M24" amino acids 216 to 367 (152 residues), 27.2 bits, see alignment E=1.7e-10

Best Hits

KEGG orthology group: None (inferred from 88% identity to amc:MADE_02647)

Predicted SEED Role

"FIG00931065: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (447 amino acids)

>MIT1002_02915 Metallopeptidase family M24 (Alteromonas macleodii MIT1002)
MRKLLAISLGLVMLSLSANAWANNILSMKQRSELIDKITVERFNSVLPQIMEREGIDMWV
LMSREYNEDPVLKTMLPSTWISARRHTMLVIYNPGNGQPLERLAVARYAVGSLFKKAWDK
EAQPDQWKALKHVIEARNPAKIAINTSDSFALADGMTSTEHDKFMAVLPEALKSRVVSGE
RLSIGWLETRSDLEMQYYPVLNQIGHSLIATAFSNEVITPNVTTTDDVVWWLRDQTRALG
LTNWFHPTVSIQRKDSEVFDQITAFSKRPGENIIRPGDLIHVDFGITYLRLNTDQQQHAY
VLKPGEKDAPASLKEALKSGNQLQDILTGNFKVGRTGNTILSMSRQQAIEQGITPAIYTH
PLGFHGHAAGPTIGMWDAQEGVPVQGDYPVFAQTAYSIELNAASFIKEWNKEIRIMLEED
AFFDGRSVTYLDGRQTEFHLIHLDEIQ