Protein Info for MIT1002_02872 in Alteromonas macleodii MIT1002

Annotation: polysaccharide export protein Wza

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 210 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF02563: Poly_export" amino acids 42 to 115 (74 residues), 86.4 bits, see alignment E=1.8e-28 TIGR03027: putative polysaccharide export protein, PEP-CTERM sytem-associated" amino acids 46 to 210 (165 residues), 237.2 bits, see alignment E=4.1e-75 PF22461: SLBB_2" amino acids 125 to 205 (81 residues), 37.1 bits, see alignment E=4.2e-13 PF10531: SLBB" amino acids 126 to 174 (49 residues), 30.8 bits, see alignment E=3.1e-11

Best Hits

KEGG orthology group: K01991, polysaccharide export outer membrane protein (inferred from 82% identity to alt:ambt_03565)

Predicted SEED Role

"FIG123464: Polysaccharide export protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (210 amino acids)

>MIT1002_02872 polysaccharide export protein Wza (Alteromonas macleodii MIT1002)
MFRFKKLITCCAPLLIIGLNGCSNTAVLPEATTRSSLTTDVNEYQYLIGPGDSLTIFVWR
NPEVSGNFIVRPDGKVTTSLVEDIDVAGKTPTMLAREIEEQLSTYINNPRVTVSVNNFTG
PLSEQVRVIGEATNPSAVSYSEHMTLLDLMIAVGGLTEFADGNGAKLVRVVDGKQKTFEI
KIDDLIRDGDISKNVDMLPGDIVIIPEAWF