Protein Info for MIT1002_02868 in Alteromonas macleodii MIT1002

Annotation: GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 381 PF13439: Glyco_transf_4" amino acids 16 to 183 (168 residues), 52.7 bits, see alignment E=1.1e-17 PF00534: Glycos_transf_1" amino acids 193 to 364 (172 residues), 129.6 bits, see alignment E=1.9e-41 PF13692: Glyco_trans_1_4" amino acids 203 to 348 (146 residues), 88.9 bits, see alignment E=7.6e-29

Best Hits

KEGG orthology group: None (inferred from 49% identity to pat:Patl_1191)

Predicted SEED Role

"glycosyl transferase, group 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (381 amino acids)

>MIT1002_02868 GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase (Alteromonas macleodii MIT1002)
MKKTLLLTENFPPKEGGSGRWFWELYSRLPNDKVLIVANDTPEGREFDKTHELDIVRIEL
ESTEWGLASTKGLGFYWETIRKVLKLIKEYGIEEVHCGRVIPEGVIARALKLLAGARYNC
FVHGEDVETAATSREHSLLVKNVCKNASMLICNSENTANIVRKLGFDSGSKCEVLHPGVD
TSRFEVAAPDTSFRQKMGWSGKRVLLTVGRLQRRKGQDFLIKSMPTLLNEFPDLFYAVVG
RGECYDELISLVDQHELHDKVCVYPDMDDEALIKCYQQCDIFILPNRTIGNDIEGFGMVL
VEAQVCGKPVIAGDSGGTRETMNIGKTGHIIDCSSTENLLNGLSPILRNPEIVDGEVNIA
DYAKNRFNWDQHVAKAKRLFK