Protein Info for MIT1002_02855 in Alteromonas macleodii MIT1002

Annotation: Putative glycosyltransferase EpsF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 PF13439: Glyco_transf_4" amino acids 12 to 167 (156 residues), 84.9 bits, see alignment E=1.7e-27 PF13579: Glyco_trans_4_4" amino acids 13 to 166 (154 residues), 51.3 bits, see alignment E=4.5e-17 PF13477: Glyco_trans_4_2" amino acids 23 to 138 (116 residues), 35.1 bits, see alignment E=3.7e-12 PF00534: Glycos_transf_1" amino acids 183 to 342 (160 residues), 140.4 bits, see alignment E=1.1e-44 PF13692: Glyco_trans_1_4" amino acids 192 to 327 (136 residues), 118.3 bits, see alignment E=8.4e-38

Best Hits

KEGG orthology group: None (inferred from 53% identity to pat:Patl_1193)

Predicted SEED Role

"FIG040338: Glycosyl transferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (368 amino acids)

>MIT1002_02855 Putative glycosyltransferase EpsF (Alteromonas macleodii MIT1002)
MRVMHVTFDMRIGGTEMVIKNIIEGNSDANIEMSIYCIEAPLGPWGEDLKASGTPIAVEE
RQSGFDRSLISKIRKHIKDNDIDILHCHQYTPWVYGTLAAAFTKTKVIFTEHGRFYPDSS
SWKRKLVNPVLNKFTSAVTAISEATRDALVEFECIKKSDIDVVYNGIKPLEPSTGELSAL
KISLGLPENALVFGTVARLDPIKNQSMLIEAFAETEKYIAEAYLLIVGDGELMTSLNAQV
ERLGLQHKVIFTGYKANPTSYLAIMDVFLLPSLSEGTSMTLLEAMSIGKPCVVTNAGGNP
EIVAHSKTGLVTANNNQEELKEALITISESEKMRASFSESAIARFYELFHVNKMMAQYSK
IYKKVLGN