Protein Info for MIT1002_02808 in Alteromonas macleodii MIT1002

Annotation: glucans biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 41 to 60 (20 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 125 to 145 (21 residues), see Phobius details amino acids 188 to 209 (22 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 257 to 277 (21 residues), see Phobius details amino acids 284 to 300 (17 residues), see Phobius details amino acids 319 to 340 (22 residues), see Phobius details amino acids 360 to 379 (20 residues), see Phobius details amino acids 385 to 406 (22 residues), see Phobius details PF01757: Acyl_transf_3" amino acids 37 to 403 (367 residues), 73.5 bits, see alignment E=8.2e-25

Best Hits

Predicted SEED Role

"inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (425 amino acids)

>MIT1002_02808 glucans biosynthesis protein (Alteromonas macleodii MIT1002)
MTQAYVDQEATFVNRTSKGEARETAVVESPVTQRYFELDALRVIAFGVLIFYHVGMYYVL
EWGWHIKSDVQFPLLQDVMILTNQWRMSLLFLISAMVFTVVLRRAYGQTTSRWRVSLSLL
GKRALRILIPLVFGMFVVVAPQVYVEWTVSGALAMPFSEFYVAYINPNTDLFIDKQSVIG
LLTWNHLWFLPYLFVYSAFILLFFPLIRFVEVRALRVLDSLALFSVLVVTIMTAIWLELR
VAYPTSHDLLNDWYSHAKYFFVMLVGIVIVLRPALYAAILRSRYVSLTIAIALYSVIILD
RHDLLGPTGQLMESSHGFRVLVGVIVVLNHWAWLAAILGFGRKYLSNPSKVVSYLNKGVL
PYYMVHQTIIVVAAFFLSSRVSSTLGEFILITLITVVGCALTYEVAKRFLILRFLFGLKL
NENYK