Protein Info for MIT1002_02792 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 442 transmembrane" amino acids 342 to 361 (20 residues), see Phobius details amino acids 373 to 393 (21 residues), see Phobius details PF13006: Nterm_IS4" amino acids 19 to 109 (91 residues), 83.7 bits, see alignment E=8.9e-28 PF01609: DDE_Tnp_1" amino acids 126 to 352 (227 residues), 79.5 bits, see alignment E=3e-26

Best Hits

Swiss-Prot: 48% identical to INSG_ECOLI: Transposase InsG for insertion sequence element IS4 (insG) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 45% identity to sbc:SbBS512_A0120)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (442 amino acids)

>MIT1002_02792 hypothetical protein (Alteromonas macleodii MIT1002)
MSLLTNLDETFSHAEDLNAIDKLMSFVDPELLQQAYELSGVATVRRRRLPLDSVVLTIVG
MSLFRNDPVWDIANKLNVSLPGKNRFVAPSAVVQARQRLGDDAVGHVFKLMAQRAFTEYA
FEQWCGLNVLAVDGVMFRAQDTAENLDAFGCDRNAKGDNPYPQVRMCSLMETSSHLLLAS
EFDSRDVGEMSLAQRLVPSVPDNSLTLFDRGYYSLGLLYLWMTKGVNTHWMLPARKDLQY
TVRHQLSEDDAVITLKTSPQARKKFDGLPETIEARLTRYKVDGKSYRVLSSMVDAMQFPY
EEVVNVYVQRWEIELGFREMKQTLHQAKLTLRSKKPEMVRQELWGLLVAYNLIRMMMLDA
VKDMPELSPSRLSFGLCMRHIIVFFLTTLPETVTKLPAHYEYLMESLRMMRLPDKRPDRY
YPRVVRKRPTKYPTKKNASQLN