Protein Info for MIT1002_02735 in Alteromonas macleodii MIT1002

Annotation: Tfp pilus assembly protein, tip-associated adhesin PilY1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1356 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF05567: T4P_PilY1" amino acids 869 to 1089 (221 residues), 42.7 bits, see alignment E=1.8e-15

Best Hits

KEGG orthology group: K02674, type IV pilus assembly protein PilY1 (inferred from 90% identity to amc:MADE_03023)

Predicted SEED Role

"Type IV fimbrial biogenesis protein PilY1" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1356 amino acids)

>MIT1002_02735 Tfp pilus assembly protein, tip-associated adhesin PilY1 (Alteromonas macleodii MIT1002)
MKKLSTYLASITLFSCIGFSAFGDDLDIYLGNANNAVTYNPNVLFIMDSSGSMGSYDNTS
QTRMLRVQNALKEALGSATNINAGLMRFSDYGGPILYPVRNIDEAVRPEIIISTNEDDHD
AHEIDGSVTTDSNDLVLSSGIQTVTSGLRFTELNIPQGATIVNASIRFTSEKFNVAGTSL
VISAEASASSTAFASSSNNLSARTKTAANVEWATDNSFPASGEVITTPDISAVIQEVVDL
SAWCGGKNLNILIEGSSTDSASSREVRASDVGQSGAPQLVVTYDDSTATGCVQGEAIYQV
ASSRDNLEENVNGYPNTGSELTFHPSYNDYIGVRFRNVNIPQGAVVTEAYLEFTAYSTVT
YGNPSMRIRGVADDDASDFHPDRRNRLRNLPKTSGITWSMPDFYNNYTYRTPDVSNIVKQ
IVDRSGWRSGNDMAFVLDDFVSYRGAHTYNNSPSKAPKLIVKFNGSATPDASATVREHLI
SKIDELSANGLTPIVDTLLEAANYYGGRDVDYGRKRGESDVSSSVRRSTRVSHRSSYIGA
DSILPSGCSEDNLSDSDCITEQIPTPASYISPVSDLQCQTNNHIVLLSDGEANNNHSVSK
IQTLLGKSCTGSSGEKCGLDLVRNISEASTSVIGPRVITHTIGFAANNNANNFLNQLALQ
SGGGFYQADNSTDLLEAFNTILRSVKDINATFVSPGVAVNQLNRLTHRDELYFALFKPSE
GAIWPGNLKRYRLSGDEILDKNSLNAVDSVTGFFAENAHSYWSTLADGSEVSEGGAASRL
GGNRNIYVFNDTGSIVRSANELHENNTNITNADLAIQDETDANALRDAILKWTRGVDVKD
SNGDGSTTDYRSQMGDPIHSQPIIVNYGTDDSAIFVATNQGMLHSFDTSTGEENFAIMPK
TLLQNLHHFYKDTSSLEHKYGLDGDMILRTVGDNKYLYVGMRRGGRNYYVFDVTQKTSPT
LKFKIEGGAGTLAKLGQTWSRPTITKVNMGGQVKNVMIVGGGYDDAQDDRAIRANDVVGN
AVFMFDADTGSLLWHASNEDADLNLTNMTYSVPGRISVIDRDNDGFADHMYVADMGGQLF
RLDIYNGNSGTNFIKGARIADFGGDTAETNRHFYYGPDVTEIALGDELYYGIALGSGWRA
SPLDTVVEDNFYMLKDSGVFNRDVNGNYTFMQTVYESGMYNATSHALNSSDEGERELASQ
DFANKAGWYLNLTTNGEKVLSSPLIIDYKVFFTTYVPAVSSTSACAPPTGNSRAYLVSMF
NGNAVTDVNNDGEVNDADRSAELKQTGIAPETKILIEDIVSPVVCLGTECVSAVIDVDED
GNDEACTNAFECLAENIYGRFERIQRGSWHSETERE