Protein Info for MIT1002_02598 in Alteromonas macleodii MIT1002

Annotation: Naphthalene 1,2-dioxygenase subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 PF00355: Rieske" amino acids 51 to 111 (61 residues), 40.6 bits, see alignment E=1.9e-14 PF00848: Ring_hydroxyl_A" amino acids 152 to 350 (199 residues), 109 bits, see alignment E=3.1e-35

Best Hits

KEGG orthology group: None (inferred from 46% identity to hse:Hsero_3834)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (351 amino acids)

>MIT1002_02598 Naphthalene 1,2-dioxygenase subunit alpha (Alteromonas macleodii MIT1002)
MKIVTHPSIKSYFDADESRQEVEQAFSRGLAYAGHSLMVPEKFSYQVLPHFSDRYALFNQ
GENYELISNVCLHRQAQLLEGQGRARSIVCKLHCWGYDNTGQLKGAPHFKHAPSGQLKKE
SLSVWNGLLFRGRSPNMVLSALGLEDYIDFTDYFYAGSETTEYQFNWKTFIEIYLENYHV
YSMHPGLRQFVKPDDLEWSFGDDFSVQKVGLGDQLTKRTTPRYREFQDALIARFGQTLPR
FGAIWCFLYPNIMIEWYPDIIVVSTIYPKGAGACVNHVEFYYPEALYKDMPDYFAAEKAA
YMETAVEDEKACLLLEKGRRALYLSGEEEHGPIEPFLEAGVAHFYDWLARQ