Protein Info for MIT1002_02557 in Alteromonas macleodii MIT1002

Annotation: Sensor kinase protein RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1373 transmembrane" amino acids 760 to 780 (21 residues), see Phobius details amino acids 1097 to 1115 (19 residues), see Phobius details PF07494: Reg_prop" amino acids 15 to 36 (22 residues), 20.2 bits, see alignment (E = 1.4e-07) amino acids 60 to 83 (24 residues), 16 bits, see alignment (E = 3.2e-06) amino acids 109 to 131 (23 residues), 16.3 bits, see alignment (E = 2.6e-06) amino acids 471 to 493 (23 residues), 20 bits, see alignment (E = 1.7e-07) PF07495: Y_Y_Y" amino acids 689 to 752 (64 residues), 64 bits, see alignment 2.8e-21 PF00512: HisKA" amino acids 831 to 894 (64 residues), 72.9 bits, see alignment 5.4e-24 PF02518: HATPase_c" amino acids 943 to 1055 (113 residues), 95.8 bits, see alignment E=7e-31 PF00072: Response_reg" amino acids 1247 to 1365 (119 residues), 86 bits, see alignment E=6.3e-28

Best Hits

KEGG orthology group: None (inferred from 68% identity to amc:MADE_01175)

Predicted SEED Role

"DNA-binding response regulator, AraC family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1373 amino acids)

>MIT1002_02557 Sensor kinase protein RcsC (Alteromonas macleodii MIT1002)
MNEYSVELLTAEDGFVSSEIYSIIQDRQGFLWFGTAENGVMRYDGRRVTLFESDSDPSQG
LSHNDAGNLMLDAEGNIWIGTWGGGVNKYDPTTGRYSRYLNDPDNPRSISSNRIQSLFHD
KTGQIWLGSYDQGLNRFLGNGEFERVQKKSNEDHSLSHNRIWDIMDNNDNSLWVATSFGL
NLLDKRTLATKHFFPDPDNRTATGANEIRSLLRTSSSQFYVATQEGPFLFFPSSGVFLAQ
TTRDGKALGQVNSMIEDHEGCIWFVTTTGLYRHTGEGNYVEKMDFGYDNGLRIIYEDHTK
TKWVTSEVHGIFKLSPRRKIKQINSDSLVSPSGIELDTFKNSGDVLIATANAEIYTWKVK
EQILQKEFDSVFKEESEYSNRGVIERPIIVPDKHGNIWVAQDNFIARVNRKNGNVSRLEY
PREDSKYRQFREFRASALDNEGNVWIGTYKHGVYIYNVQSGAFEHLSTTDGLAHPEIHAI
VNDSQGNMWIGTGSGVNLWSIQDNTFTQIEYNKDHNAGLLGSIVEDIHETKNGQIWIATQ
RGLNLYKPESKSFEWFGEQKGLPATLVRAIADGDEGQLWLTTNKGIFLFNPATESAINYT
STAGAVSQNFYSNSLLRATNNTFFTSSQRGIEYFEYVPGQSELVDSKIVLTGFNKMGEAV
SLDKPLSYVTDINLSYEDYFFSLDFALLDFSDPKRSHFSYKLEGYDEQWIDIGNHNNVSF
TNLNGGTYTLLVKAMKPNGEWGSEVMSVNLHVAAAPWKTWWAYSIYFAFLLGIVLLIIYL
RTHLQQTEITKQKRFVQALEQQVSEKTASLKAQANDLKKALEQAEEATKLKSEFLANMSH
EIRTPMNGVIGMLGLLKKSNLTTEQSQRVNIASSSANSLLALINDILDFSKIEADKLEIE
SVEFDVRELIESIAQSVAHLAQEKGLDVVVDLSKVSESKINSDPSRIQQILTNLLSNAVK
FTEQGELSVTAELLPTNNQNTALMHIAVADTGIGIPASKLPHLFDAFTQVDASTTRRYGG
TGLGLSITKKLCQLLGGDISVTTELGKGSRFDVTCEIRYAEQRNAVRPQLAKQDMCCLII
DDNASTRRAMQSQLKLWGVLTLTASSIEEAISLYLKDSEQEIPAIPIDVVFLEKAEEEEF
SQHFGQILLDNPRTKHTRLVLMTQLSDMESSVVYGGIDVDESLPKPLTSSDLIRIVEESV
NTSDYEAKPRFRKREDDPVHIIEGNTQHVQSPEENAKSTSDDNAYRILLVEDNAINQIVA
TNVLESEGYEVDVANNGVEALELLKSSKLKAHYSAIVMDCQMPEMDGFEATKLIRYGAAG
DVYKRVPIIAMTANAMQGDKDMCMKAGMDDFLTKPIEHNKVTSTLQHWLNKVN