Protein Info for MIT1002_02556 in Alteromonas macleodii MIT1002

Annotation: Short-chain fatty acids transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 435 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 54 to 80 (27 residues), see Phobius details amino acids 96 to 124 (29 residues), see Phobius details amino acids 135 to 161 (27 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 264 to 283 (20 residues), see Phobius details amino acids 295 to 320 (26 residues), see Phobius details amino acids 328 to 352 (25 residues), see Phobius details amino acids 389 to 406 (18 residues), see Phobius details amino acids 413 to 434 (22 residues), see Phobius details PF02667: SCFA_trans" amino acids 1 to 435 (435 residues), 507 bits, see alignment E=2.8e-156

Best Hits

KEGG orthology group: K02106, short-chain fatty acids transporter (inferred from 95% identity to amc:MADE_01176)

Predicted SEED Role

"Short chain fatty acids transporter" in subsystem Polyhydroxybutyrate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (435 amino acids)

>MIT1002_02556 Short-chain fatty acids transporter (Alteromonas macleodii MIT1002)
MLNRASKPFVKLVERYLPDPYIFVLLLTLITFAFAVVIQNQSPLTTIRQWGDGFWGLLTF
SMQMLLVLVTGFMLACTPLVKALLERLASLAKSPGSAIVLVTLVSLIASWINWGFGLVVG
ALFAKALARKVSVDYRLLVASAYSGFIVWHGGLAGSVPLTIATPGHFSEAQIGVVGTGET
IFSGFNLLLLAIMFVIIPLVNRLMLPPESESIIVDSAKLKDDALPSATNERPADKLENSK
VLGLLVGFAGLAYLTNYFVSGGGLNLNIVNTLFLFLAIVLHGTPRNVLHSLQQAVQGGSG
IVIQFPFYAGIMAVMVQSGLAQTMSEWLISFASAESLPVWSFISAGIVNIFVPSGGGQWA
VQAPVILPAAAELGAEINRVAMAVAWGDAWTNLIQPFWALPVLAIAGLKAKDIMGFCLVQ
LIVTGVIISLVLRFV