Protein Info for MIT1002_02541 in Alteromonas macleodii MIT1002

Annotation: kelch-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details PF01344: Kelch_1" amino acids 118 to 165 (48 residues), 24.2 bits, see alignment 5.7e-09 amino acids 173 to 211 (39 residues), 22 bits, see alignment 2.8e-08 PF13964: Kelch_6" amino acids 119 to 167 (49 residues), 32.8 bits, see alignment 1.5e-11

Best Hits

KEGG orthology group: None (inferred from 86% identity to amc:MADE_01192)

Predicted SEED Role

"Kelch motif domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>MIT1002_02541 kelch-like protein (Alteromonas macleodii MIT1002)
MLLKKPRTIALRIFQSAVPRLSFVVAAFMIASAATVSATAAPIALPALPEPVSNNAVASV
TIDDTQYVFSFMGLSKGKTHKDVHNRAWQLPIDSKDKPLQWQALTPVPSSLALKGRLASV
AVGVNDSIYIFGGYTVDKDHNEISTPDVYKYAPVTGKYTLLAPMPVPVDDASALVYQDRY
VYVVSGWHNDGNVNLVQVYDTQTGQWQQASPFLGNPVFGQAGGIVNNTMVICDGVSVTPH
SDKRRSFAAETACFKGVIDKKNPFKIDWRTLDHPTGTARYRMAAAGDKATNKIYFVGGST
NPYNYNGIGYNGEPSTADDAIWTFDISEGTWVISKTEAEAPTMDHRGLINVNGSWVTIGG
MLGAHLVTSKVTSHFSTPAEVSCPSKSQVSSGVSKQATDGQAVEVVKTASNSKCQHNDDI
NGEK