Protein Info for MIT1002_02526 in Alteromonas macleodii MIT1002

Annotation: cell division protein DedD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 signal peptide" amino acids 1 to 9 (9 residues), see Phobius details amino acids 25 to 25 (1 residues), see Phobius details amino acids 27 to 27 (1 residues), see Phobius details transmembrane" amino acids 10 to 24 (15 residues), see Phobius details amino acids 26 to 26 (1 residues), see Phobius details PF05036: SPOR" amino acids 128 to 197 (70 residues), 45.8 bits, see alignment E=3e-16

Best Hits

KEGG orthology group: K03749, DedD protein (inferred from 81% identity to amc:MADE_01208)

Predicted SEED Role

"DedD protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>MIT1002_02526 cell division protein DedD (Alteromonas macleodii MIT1002)
MTSALKNRLVGTIIVVALAVIFLPDFLDGKKQTNREPFVSVPANPPKKPIVEPESFPSER
VAKAAVPAVEIQDETALDDDLDSSGAGESGRAGEATTATAPAVKTFEEEDNLASQTVVNT
KSVADDDAGWVIQLGSFRHEKNVKALLTKLEKAGYRAFSRKIQTSSGPLNKVFVGPDLDK
KKLESALPHLKELTSLKGKVTTFKVE