Protein Info for MIT1002_02442 in Alteromonas macleodii MIT1002

Annotation: putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 344 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 87 to 110 (24 residues), see Phobius details amino acids 116 to 135 (20 residues), see Phobius details amino acids 226 to 244 (19 residues), see Phobius details amino acids 259 to 283 (25 residues), see Phobius details amino acids 285 to 285 (1 residues), see Phobius details amino acids 290 to 313 (24 residues), see Phobius details amino acids 321 to 343 (23 residues), see Phobius details PF03773: ArsP_1" amino acids 5 to 340 (336 residues), 197.1 bits, see alignment E=1.9e-62

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 54% identity to vsp:VS_II1252)

Predicted SEED Role

"conserved hypothetical protein, membrane"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (344 amino acids)

>MIT1002_02442 putative permease (Alteromonas macleodii MIT1002)
MSPQLQEALGMFAFLAIELSVLFIGISLLVGVLQRHIPPSKVEALLTSSGKRGYFLAAGL
GAITPFCSCSTIPMLKGLIRARAGFGPMMVFLFSSPLLNPIVVGLLVATFGWTLTAIYVL
AALVVAVGAGWLLHTLGFERYVRRTATQESSGCSSSASPCSATSTASSCGTNSCDTTPKT
ASCGADRKTTVSTSSECCDSQPTVTVKKEGKYSGVWREAWSDFIDVLPYLLIGIAIGSVI
YGFMPTDLLEQYAGPDNPFAIPVAAVIGVPLYIRAEAVIPLAAALMAKGVGAGTVLALII
GSAGASLTELILLRSLFTLKLLAAFLAVIFAMAMIAGYATYLFF