Protein Info for MIT1002_02436 in Alteromonas macleodii MIT1002

Annotation: putative transposase OrfB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 PF00665: rve" amino acids 127 to 228 (102 residues), 69.9 bits, see alignment E=4e-23 PF13610: DDE_Tnp_IS240" amino acids 145 to 277 (133 residues), 27.4 bits, see alignment E=7.5e-10 PF13683: rve_3" amino acids 219 to 285 (67 residues), 61.8 bits, see alignment E=8.4e-21 PF13333: rve_2" amino acids 237 to 287 (51 residues), 22.2 bits, see alignment 2.6e-08

Best Hits

KEGG orthology group: None (inferred from 54% identity to hmo:HM1_1155)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (343 amino acids)

>MIT1002_02436 putative transposase OrfB (Alteromonas macleodii MIT1002)
MTLVQDAQRDGARLAKACQVMGINVRTYYRWVSEGEVTADRRPDADRPEPANKLSPEERE
AVLALCNAPEYRSRPPAFIVADQADKGRYLASESTMYRVLHEYDQQHHRGRQQAPQRKRS
PTTHQATAPNYLWCWDISWLPGPARGTWWYLYLIMDVFSRKIVGHEVYETETGELAAELI
QKACWREHLTDRHKPLILHSDNGSPMKAATFLEKLYDLGITPSYSRPRVSNDNAFAESAF
KTLKYRPGFPAEGFATLTEAQDWVQQFTEWYNHEHRHSALRYVTPSQRHNGEAKGILAQR
REVFEAAKQRHPERWSGDIRKLSLPEIVHLNPERDPVPQAAGF