Protein Info for MIT1002_02350 in Alteromonas macleodii MIT1002

Annotation: Colicin I receptor precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 946 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF07715: Plug" amino acids 52 to 164 (113 residues), 69.8 bits, see alignment E=2.7e-23 PF00593: TonB_dep_Rec_b-barrel" amino acids 369 to 912 (544 residues), 124.9 bits, see alignment E=8.5e-40

Best Hits

KEGG orthology group: None (inferred from 91% identity to amc:MADE_01035)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (946 amino acids)

>MIT1002_02350 Colicin I receptor precursor (Alteromonas macleodii MIT1002)
MKNIATAVQLALAGSVALTSGNVLAQDSTNESADVEKIQVTGSRISRQGAIAPSPVTAIS
GESLLNSGAMNIGEVLNELPSLANTFSLGNSGQFIGTAGLNILDLRGMGTDRTLVLVDGK
RHVSSSAGSAAVDTNTIPTSWIERVEIVTGGASAVYGADAVTGVVNFILKKNIEGFDVSA
TQGFAQENGYKNDKYQASYGFNFDNDRGNIAFAAEYSSQEALEALDNPWTATSYRNMSFE
SIMGYERSEDQLNSTAFPDNFYTANAGYYTLNNSGVFGGNSQTFNADGSIREIYTGDQVD
GAFCANCDSFNLRQFTQLQPEFDRTNLNVKGNYELNDDTTVYAQAKYARTRAITMGQPAF
FYGGSETTIYRNNAFLDDSVAAYMDENELDSIQLNRMMTDLGRRTEADERETYRYVLGIE
GYIGDEWSYEAFVNYGKTELERENRNNLVLQNFENALNAITDGDGNIVCASGSDDGCVPL
NIMGFGQPSQEAIDYVNTTSVGTSKIEQYNAGATIANSGIYELPAGYVGFAAGVEYRKEK
SEIEEPDNAAGTFFNTLGEDKGDYDVSEVFTEVTIPLLADLPGVEMLTFDTAARIANYSS
IGNAKSWKLGLDWKVYEDLRLRATKSSALRAPNIGELYGEASQTFFRVDDPCRTDNLADL
ANADQRIANCAALGIPADFNSDYDSATLEGVNGGNIDLQAESSISKTLGVVYTPSWFEGF
TATVDYWEIELTDAISSIDGQTILDRCVDSESGINNVYCGLIDRDGTTGEITQIRSYALN
IAGQEAKGIDFELGYDFDALEGAFRTSLIATYLKDRKEFPFQDNPEVFYQYAGTAGESDW
QGVFTINYSRGDWEASWKTRYLERSSLYDNQELARNPNPSNRMELPSYAVTDVTAGYNFA
NGVSLTVGIDNLFNRALPTGTTGTGSIDGAYDNIGRFGYVTVAYKM