Protein Info for MIT1002_02125 in Alteromonas macleodii MIT1002

Annotation: Inner membrane protein YbaL

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 523 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details transmembrane" amino acids 45 to 63 (19 residues), see Phobius details amino acids 79 to 101 (23 residues), see Phobius details amino acids 111 to 131 (21 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 169 to 185 (17 residues), see Phobius details amino acids 197 to 212 (16 residues), see Phobius details amino acids 218 to 233 (16 residues), see Phobius details amino acids 245 to 264 (20 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details amino acids 302 to 325 (24 residues), see Phobius details amino acids 331 to 351 (21 residues), see Phobius details PF00999: Na_H_Exchanger" amino acids 7 to 347 (341 residues), 136 bits, see alignment E=1.6e-43 PF02254: TrkA_N" amino acids 387 to 502 (116 residues), 65.2 bits, see alignment E=7.1e-22

Best Hits

KEGG orthology group: None (inferred from 87% identity to alt:ambt_08210)

Predicted SEED Role

"putative Glutathione-regulated potassium-efflux system protein KefB" in subsystem Potassium homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (523 amino acids)

>MIT1002_02125 Inner membrane protein YbaL (Alteromonas macleodii MIT1002)
MEYAFLLFAFVCGLTVKLIGIPPLVGYLVAGFLLNFAGYTLTEDLTQIANLGITIMLFTI
GLKLNIRDLSRREVWAGSVSHTLVWVGVITCCVYAIGAVAANFVDGLTWKSAALIAFALS
FSSTVCVVKVLEESGESKTRHGRLAIGILVMQDVFAVIFLVAATGKLPSVWALALLALFP
AMPIINKMINKSGHGELLPLTGFILALGGYHLFELVNIKGDLGALIFGIMLAQHEKASEL
AKSLLSFKDLFLIGFFLTIGLTALPDLSMIVLAIVFCLFIPLKAALFFGLFTSLRLRGRT
AYLSSLVLSNYSEFGLIVGALAVSLDLLANSWLVVIALAVSISFVITSVLYRNSHSQYHN
HKHTIKRFEKNERLKEDIYPTLHNAEFLVLGMGRVGRGAFNALSKLSDVSVWGMDADRVK
VKELSDEGLNVICGDGEDVDLWDNLDIKQIQLVLLALPSIQDAINITRQLKNAGYVGKVA
AIARYEDEVSHLLENDVDKVFNFFTEAGLGFAEESLAYAHAQQ