Protein Info for MIT1002_02046 in Alteromonas macleodii MIT1002

Annotation: Deoxyribodipyrimidine photo-lyase-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 512 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF04244: DPRP" amino acids 5 to 227 (223 residues), 278.2 bits, see alignment E=3e-87

Best Hits

Swiss-Prot: 51% identical to PHRB_AGRFC: (6-4) photolyase (phrB) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K06876, (no description) (inferred from 91% identity to amc:MADE_02017)

Predicted SEED Role

"FIG004436: Protein related to deoxyribodipyrimidine photolyase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (512 amino acids)

>MIT1002_02046 Deoxyribodipyrimidine photo-lyase-related protein (Alteromonas macleodii MIT1002)
MAALILVLGDQLTETLPAIANAVKSKDTILMAEVREEATYVKHHKKKIAFLFSAMRHFAK
ALREDNFNVNYVHYSDKNNQGDLLAQVKHELNGNDFDEVKVTMPGEYRLLKSMEQWKNVL
GIPVSICDDNRFLSSPQEFTDWAEGKKQLRMEFFYREMRRKHNVLMEGKNPIGGKWNYDA
QNREVMPETQRVPKHSTFEIDDITSKVIELVKSEFSDHFGDINHFHFAVTRKDALSVLNT
FIEERLPNFGQYQDAMVEGKPWLYHSHIAFYLNCGLLTPKEAIHAAEQAYHAGKVPLNSA
EGFIRQILGWREYVRGFYWHFMPNLKTDNYFNNSRALPSFFWDAQTNMNCMRQCIKETQQ
NAYAHHIQRLMVIGNFSLLTELSPEEVQAWYLLVYADAYEWVELPNVAGMILYSDGGNLA
SKPYVASGSYINKMSNYCKNCGYQVSKKTGPKACPFNYLYWHFIDKHKEKLSNNHRMAMI
YKTYGRMKEENIETMKQDASTFLTKLTKNEEV