Protein Info for MIT1002_02011 in Alteromonas macleodii MIT1002

Annotation: Minor extracellular protease vpr precursor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1321 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 1298 to 1314 (17 residues), see Phobius details PF05922: Inhibitor_I9" amino acids 92 to 164 (73 residues), 29.9 bits, see alignment 1.9e-10 PF00082: Peptidase_S8" amino acids 191 to 664 (474 residues), 160.4 bits, see alignment E=1.5e-50 PF02225: PA" amino acids 438 to 530 (93 residues), 55.9 bits, see alignment 9.5e-19 PF17963: Big_9" amino acids 1091 to 1184 (94 residues), 43.4 bits, see alignment 1.3e-14 PF17892: Cadherin_5" amino acids 1145 to 1184 (40 residues), 39.1 bits, see alignment (E = 1.4e-13) TIGR03501: GlyGly-CTERM domain" amino acids 1297 to 1317 (21 residues), 22.3 bits, see alignment (E = 7.7e-09)

Best Hits

KEGG orthology group: None (inferred from 86% identity to amc:MADE_01952)

Predicted SEED Role

"Serine protease, subtilase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1321 amino acids)

>MIT1002_02011 Minor extracellular protease vpr precursor (Alteromonas macleodii MIT1002)
MKKTILSTVIATALAGSAFGALAISNQLSGHSVEQRNAIEASFDKKNILANAIQADSDSV
RVIVQLTDVPMAQFSAVNPSVSSMAAHKGQKVNFKSNAAKEYQSFLEAQQQSVIQSIKSF
DKSFKADMSYTAAFNGFAGIVSKSALDKLSSLSTVKAVYPDLVHHAQMDASLDLIGAVQT
WEQFGGKESAGAGVKVAIIDSGIRPENPLFSGENFTAPDAATLPTDDYCSEVPDFCNNKL
IVARAADIVEGFSVVEEEYESPLGFNGHGTHVAGTAVGNYGVMAERDGAEAEISGVAPAA
YLMVYKGLYATPANPASSSGASSMLLSMLEAALTDGADIVNNSWGGGAGGNPNGSVYEDV
LEAMHDAGVVTVFAAGNDGPGAGTIGCPGCSEDVITVANTTTGRLFANEVTVEGDTTLGS
IPALYSVGNPAIVFDSPITAPVVYAGEVDAANVEGCDAFAAGAFDGAIALISRGTCGFVT
KIENAEAAGATAVLIHNVDGRGEAPILMGGLSEAQTIPSLMLPATPGLALANLAETTDES
LNVTIGSDIVRVVSDSLADIMNESSSRGPNGDPTFLKPNIAAPGTRIFSGESPDAPGHED
QNFSFKNGTSMASPHVAGAAALLKQMHPDWTAQQIKSALVTSSIRDILKEDASTAADNFD
MGAGRLDLPRATSVELTYSDLSLVSSECYITCEMSITVTNTSDADVTVDATTMFDDDNIV
ATVTPAMASLPAGASAQIMVSVDVSLAGSGEWLFGGINWADTNDETTDYFIPVAIYPINT
DEPELFNSSVSNTFAAENETVVTSASVTNSGVTGLIGVTSTVDEKYDIDVSSISAVKNGN
QEPVTYDAEKREVRWEGALNTATLELVETAAPFGYLPMRNLPFVVDPIVCSETCDDAAIT
VESFIDIEYMGQTYTNVQVSSNGFISLGTSSGQVTEYRPQSLPGASEPNNVIAPYWTDLD
LDGTADDDTGTGTMYAATLNTSTNQFFVVEWENAMLWGDTGSSVNFQIWYDRNAASFSFA
YGPMSPNGTPTVVGFENASGTVGYTHAAQLSTGIVGSLPVEGDEFGIVTIPGDQITVSYS
GSVKPSGELMDDVLSVDEDASITANILANEMEDMIFNTFEMESLSGDFRTYTPIEVDREE
LDPSTLEVVAEAQNGTVAINDDGTITYTPNADFFGEDSFTYTVRVMGTTTEEGEEVLGEA
IGEGTVTVAVAGVQDAPVISISAPTSVDEGQSYTVTASATDADGDDVTITINGVERTSFT
DTAPSNEQSNRVTVQVTASDGIETTTESVTIRVNDKSGGSMGWIALLLAPAVYLRRRMKR
S