Protein Info for MIT1002_01972 in Alteromonas macleodii MIT1002

Annotation: metal-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 TIGR00486: dinuclear metal center protein, YbgI/SA1388 family" amino acids 7 to 252 (246 residues), 219.4 bits, see alignment E=3.1e-69 PF01784: DUF34_NIF3" amino acids 8 to 241 (234 residues), 213.2 bits, see alignment E=2.3e-67

Best Hits

Swiss-Prot: 55% identical to GCH1L_ECOLI: GTP cyclohydrolase 1 type 2 homolog (ybgI) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 82% identity to amc:MADE_01899)

Predicted SEED Role

"FIG137478: Hypothetical protein YbgI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (253 amino acids)

>MIT1002_01972 metal-binding protein (Alteromonas macleodii MIT1002)
MSITRLELQNYLDGMLRVSEISDYCPNGLQVEGASKIEKIVTGVTASQALVDAAIEAKAD
ALIVHHGYFWKGESQVIAGMKKRRLQALLSNDINLFAYHLPLDIHPEFGNNRQLASLLGI
QNISAVSGVKPVGVVMHGNFEEEIEGSALQVKLQKLLGRDVLIEGPVSKPISKLAWCTGG
GQGFIEQAVELGVDAFITGEVSEQTVHTAREMGITFFAAGHHATERYGVKSLGEHIGQQF
DVPVEFIDIDNPA