Protein Info for MIT1002_01824 in Alteromonas macleodii MIT1002

Annotation: 50S ribosomal protein L16 arginine hydroxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 PF08007: JmjC_2" amino acids 107 to 218 (112 residues), 127 bits, see alignment E=3.3e-41 PF20514: ROXA-like_wH" amino acids 275 to 384 (110 residues), 27.2 bits, see alignment E=3.2e-10

Best Hits

KEGG orthology group: None (inferred from 86% identity to amc:MADE_02373)

Predicted SEED Role

"FIG002776: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>MIT1002_01824 50S ribosomal protein L16 arginine hydroxylase (Alteromonas macleodii MIT1002)
MPTNDNSYIIDAQSGNGFNAETFLKNYWQQKPVVIKHFFDNFVDPIDENDLAGLAQESEV
DARIISNVKGSWHVEQGPITDFDKACQGKWTLLVQGVDKYVPDVTPLLDPFSFIPNWRLD
DLMVSFATNGAGVGAHIDQYDVFLVQGKGRRRWRVGKPADYKEVFPHPKLRQIEGFDPVI
DVVVEPGDVVYVPPGWPHDGATIEDSLTYSVGYRAPDNLQLAESLAMMLDKGAHNYRFTD
ASRSMQGNRAWVNPSDVAILKQQLIDAINGEDFTLALLEAMSEQGIPEYPLEDEVSLEQI
SNEFAAGISFVPAPGVRALLCDGKRSLPRALFVNGSQFEFGKSDQEWFEVLASGGVLNAT
CCQDAPSFTFLETLTTLINNGYWEWFEG