Protein Info for MIT1002_01801 in Alteromonas macleodii MIT1002

Annotation: ABC-type transport system involved in multi-copper enzyme maturation, permease component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 366 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 206 to 230 (25 residues), see Phobius details amino acids 241 to 261 (21 residues), see Phobius details PF12040: DUF3526" amino acids 280 to 366 (87 residues), 46.8 bits, see alignment E=2.6e-16

Best Hits

KEGG orthology group: None (inferred from 83% identity to amc:MADE_01805)

Predicted SEED Role

"FIG01209878: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (366 amino acids)

>MIT1002_01801 ABC-type transport system involved in multi-copper enzyme maturation, permease component (Alteromonas macleodii MIT1002)
MIRFNDIKREAGFVFGHRQIKLTLLVVFLLSSVSLWSGYSEMQGQQATIERLLDKDETER
NAVLTHQSNYGMVAYYAFHLTYAPPSPLAFAAVGERDVFPWKHRIRMLALEGQIYESDTD
NPELAFLGRFDFAFVTSVLLPLFIILLLYDLKAKEREARRFDLLNVTARNSHAIWSSRVL
VTLVPLALVTLIPFIAFSVVNGASVFQTVTVCTIVIGSIIVWSAIVLAIGAAKRFANFSA
THLASIMLGVWLVTTVIVPVSGHTIINASVDTPEGGDIVLTQREAVNSAWDKPVEQTWEA
FIETHSQWADKTDFDPQRDSSFNWKWYYAFQQVGDQTAKELSEAYQAATLRKDKIASYVA
LLSPSL