Protein Info for MIT1002_01677 in Alteromonas macleodii MIT1002

Annotation: Sensor kinase protein RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1260 signal peptide" amino acids 15 to 15 (1 residues), see Phobius details transmembrane" amino acids 16 to 35 (20 residues), see Phobius details amino acids 330 to 350 (21 residues), see Phobius details PF21623: HK_sensor_dom_bact" amino acids 103 to 259 (157 residues), 69.4 bits, see alignment E=7.1e-23 PF00512: HisKA" amino acids 514 to 578 (65 residues), 65.9 bits, see alignment 7e-22 PF02518: HATPase_c" amino acids 626 to 739 (114 residues), 98.2 bits, see alignment E=1e-31 PF00072: Response_reg" amino acids 924 to 1042 (119 residues), 70.6 bits, see alignment E=3.2e-23

Best Hits

KEGG orthology group: None (inferred from 73% identity to amc:MADE_02404)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1260 amino acids)

>MIT1002_01677 Sensor kinase protein RcsC (Alteromonas macleodii MIT1002)
MSFLKSSSSISEAKSTLGLALVLATVLVVLVVGLFESNIKATAESQTFTALEESAASAEN
AANSQVRKYINALNFLHQTPPISGIVRATENENLDPKDGTTLEQWKQRLETIFVAFIENN
EEVDQLRIIQANEDGNEFIRVERNGGSVLVVKGNDLQPKAARSYFIESVKRKKGEFYISD
INLNREYGKLEFPYKSVIRLSLPIFSSSGERYGFIIMNVNAQFLLSQMEQTLVGNQLLFV
TDSEGFFVSHPDSDKSFSRDLNPTVNWASEFESPSKIGRAKIKQTAQTNSSLYTVTRAFT
INGNQQTAPFFLHTALSQSEVAALINEKRISVYSVIGVVTLIFVSVLLFVHRSNSKNIEL
AKVRGESVAIIAISKDAIFSVDSAGVVKSWNMAAESLFGIPSQLILNHHYSSFEQLSLLG
LESVLTKGGKQSTFTTPYTDDEKEEHTLLITASTIWGEQSQFSGVAVVIRDVTDERKAKD
AIERVNLKLEEKVVSRTKELVEATQEARKASKVKSSFISNISHEMRTPLNGVVGSLALLK
RQPLNEKAEQLVSMMEISCNNLSVLINDVLDLSKIEAGKLDINNQYFDPLALIESIAKVF
AVKAASKGLQLLVDTTGLPPVEINSDPHRINQILSNLLNNAIKFTEEGHIKLQASLSDVD
AGTQQLHFSVCDTGVGIAQENQPKLFTAFTQADASVATQYGGTGLGLSICKQLSQLMGGD
ITFNSEVDIGSTFSFFVTLPETTYDSAFEHKMAVENESMLLNGITIGVSASYPPLEENIC
CLALHVGAEPQVLGKHSELGTVPWTQLNAIIVDEASSLIRELDDIWQAQAATKDAGSLPV
VYILQKLEGTPFHFNHLVPLYLPKPLFRSSFAIVQQGLDAALSGYTLNQSDISSGKGKAE
DISNDEGAADDTEQQLSIENANLLIVDDNMINREVAKGVLESLPVRLFTCSDGEEVVAFL
TKCESKGRRIHSILMDCQMPNMNGYDATRAIREGKAGAMHKDVPIIAMTANAMLGEKEKC
LAAGMDDFATKPVMADVLIPKVKQWLVHQITALASAELNDTDTRSGTVITASEPPLVDRL
LSAISKEMDCDTLSHSRTEAQSSKESEVEIAPTIKNAKIANDIAAREGSEKGAEIDNVSK
TQAYENNSEGLDGCWEKDDAIARIMGDKALFSRVCDLYSRSAPDKLKLLQQAVDSRDFEK
VQVLSLKLKGMSADIGAVQLQRDFESLWELSKAKKWEDAEALLPSITDDLNTFLEILEVA