Protein Info for MIT1002_01549 in Alteromonas macleodii MIT1002

Annotation: transposase/IS protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF01695: IstB_IS21" amino acids 9 to 244 (236 residues), 217.5 bits, see alignment E=2e-68 PF00004: AAA" amino acids 103 to 199 (97 residues), 21.3 bits, see alignment E=3.1e-08

Best Hits

Swiss-Prot: 45% identical to ISTB_BURM1: Insertion sequence IS408 putative ATP-binding protein (Bmul_4731) from Burkholderia multivorans (strain ATCC 17616 / 249)

KEGG orthology group: None (inferred from 99% identity to alt:ambt_05435)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (248 amino acids)

>MIT1002_01549 transposase/IS protein (Alteromonas macleodii MIT1002)
MTQSQLQEQLRSLRLGHFAQALQQQQSQATTYDEMSFEERLGLLAQHEIHCRQDSKVKRL
LRQATLRLEAHASRLEYRAERGLRKDKVATLLSGQYLHRAHNIIVTGATGCGKTYFACAL
ARQACEQHHTVRYYRLGQLLDELNIGHADGSYRQQLAQLAKKKLLILDDWGMEKLSARQA
NDLLDVMEERYQNTSTIIASQLPVTEWYKLISNPTVADALLDRLLHNSHRIELAGESMRK
LDQSDHLR