Protein Info for MIT1002_01443 in Alteromonas macleodii MIT1002

Annotation: Recombination protein N

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 561 TIGR00634: DNA repair protein RecN" amino acids 1 to 556 (556 residues), 548.6 bits, see alignment E=1.1e-168 PF02463: SMC_N" amino acids 2 to 517 (516 residues), 82.5 bits, see alignment E=3e-27 PF13476: AAA_23" amino acids 5 to 210 (206 residues), 58.8 bits, see alignment E=1.2e-19

Best Hits

Swiss-Prot: 50% identical to RECN_VIBC3: DNA repair protein RecN (recN) from Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 91% identity to amc:MADE_02270)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (561 amino acids)

>MIT1002_01443 Recombination protein N (Alteromonas macleodii MIT1002)
MLAHLSISNFAVVKQLSVQLENGLTAITGETGAGKSIAIDALSLCLGERADANAVRKDSA
KAEIIAHFSLNGNVLAKAFLDEHELTSDEDENSCFIRRVISKEGRSKAFINGIPASLQQL
KGLGQFLLAIHGQNTHLQLLKEDHQRELVDGYAKHNDILVQVRETYSLWRDKQRTLKALQ
EQAQQREDRIQLLTYQVQELDEFAIEEGEFEELEIEHKRLSNGQSLLEQAQTSVYNLYES
DEGNALSVIQSSIERLGELEAHDASLTPIIAMLNDAAIQVEEAAGELRSYCDHLEIDPLR
LQQVEARYAKAMELARKHTVMPEGLYQHHQELAAEFNALSEQETLLGTLEGEVEEAQVTY
LTATKALSESRQRAAGKLSEDIEVQIRQMNMPHAKVDIQIQYDELKKPVSTGLDTVEFKV
STNPGQDADKLEKVVSGGELSRIGLAIQVIASGHHATPTMIFDEVDTGISGPTASIVGGL
LRKLGKQSQVMCVTHLPQVAAQAHNQLFVTKLTDGESTETQMLALTKQDRIDELARLLAG
DKVTKSALANAKELLKSAASN