Protein Info for MIT1002_01433 in Alteromonas macleodii MIT1002

Annotation: Segregation and condensation protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 PF02616: SMC_ScpA" amino acids 69 to 280 (212 residues), 111.8 bits, see alignment E=2.7e-36

Best Hits

Swiss-Prot: 55% identical to SCPA_XYLFT: Segregation and condensation protein A (scpA) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K05896, segregation and condensation protein A (inferred from 89% identity to amc:MADE_02285)

Predicted SEED Role

"Segregation and condensation protein A" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (287 amino acids)

>MIT1002_01433 Segregation and condensation protein A (Alteromonas macleodii MIT1002)
MSELVKENNNDNEASIEKGLSTPVQQPLPLAFINGEALIEKPEDLFIPPDALEVILETFE
GPLDLLLYLIRKQKFDITTLPIADVTKQYMEYVDAMMSLKLELAAEYLLMAAILAEIKSR
LLLPKRSDDSDEEEDPRAELIRRLKEYELVKQAAEDLDIQPRLERDIFTTHVELSENVAP
IRIEPDVSLAEIVLAFSAAMKRAEAFEHHTIAREALSTRERMSLILSLLTTTEYTPLERL
FTVEEGKAGVVVCFLAILELVKEQLILCIQAGPYAKIHVKLGAHEEN