Protein Info for MIT1002_01375 in Alteromonas macleodii MIT1002

Annotation: ribosomal-protein-alanine N-acetyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 PF00583: Acetyltransf_1" amino acids 61 to 185 (125 residues), 52.4 bits, see alignment E=1.6e-17 PF13508: Acetyltransf_7" amino acids 96 to 186 (91 residues), 40.9 bits, see alignment E=5.7e-14 PF13673: Acetyltransf_10" amino acids 113 to 206 (94 residues), 27.9 bits, see alignment E=5.1e-10 PF08445: FR47" amino acids 127 to 187 (61 residues), 30.5 bits, see alignment E=7.1e-11 PF11814: DUF3335" amino acids 219 to 421 (203 residues), 274 bits, see alignment E=1.7e-85

Best Hits

Predicted SEED Role

"GNAT family acetyltransferase VC2332"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>MIT1002_01375 ribosomal-protein-alanine N-acetyltransferase (Alteromonas macleodii MIT1002)
MITSAERVIEVNNASPQESANRAYGLAEGASNTKSTNGAGVPSTQSSVVLRVATLHDLAS
LQHIEQTCFTTDRLSKSRFKFYIDAQHAELIVAEREPSTSSSNLDKNKPSLNSIVGYGLL
LLRRGTQLTRLYSIAVLPEARGLGVAEKLINSLGERALLRGKRFMRLEVAVGNAGAIALY
KKLGFSQFGMYTDYYDDHTDALRMQKVLVPSKSVKPEVYPWYQQTTDFTCGPSALMMAMR
ALNNRYEMTQEKELSLWRTATTIFMMSGHGGCHPVGLALAAVNEGYAAKVVINQDVPLFV
DGVRDTNKKAIVENVESQFMAEARRKGISVEISDWRVDVIDQTLKAGGAVLCLISTYAFD
KKKVPHWVAVTSCDSHCYYLHDPDASEGQPVEYQHIPVAREDFLRLASYGTRKVRTLVLL
KKKK