Protein Info for MIT1002_01309 in Alteromonas macleodii MIT1002

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 173 TIGR02273: 16S rRNA processing protein RimM" amino acids 8 to 173 (166 residues), 163.6 bits, see alignment E=1.3e-52 PF01782: RimM" amino acids 10 to 87 (78 residues), 86.7 bits, see alignment E=1.6e-28 PF05239: PRC" amino acids 95 to 168 (74 residues), 50.3 bits, see alignment E=3e-17 PF24986: PRC_RimM" amino acids 99 to 172 (74 residues), 48.2 bits, see alignment E=1e-16

Best Hits

Swiss-Prot: 66% identical to RIMM_PSEA6: Ribosome maturation factor RimM (rimM) from Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087)

KEGG orthology group: K02860, 16S rRNA processing protein RimM (inferred from 98% identity to amc:MADE_01706)

Predicted SEED Role

"16S rRNA processing protein RimM" in subsystem Ribosome biogenesis bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (173 amino acids)

>MIT1002_01309 hypothetical protein (Alteromonas macleodii MIT1002)
MSLASDKVIVGKIGAPYGVKGWVKINSYTETPEGIFDYAPWFLGDEKEYQIDQWRPHGKS
LVAKIVGVDSRDDAERIKNLDININASQLPDLGDEGVYWRELTGMKVVTTQGYDLGVVKE
VFNTGANDVIHVKANVGDAFGQKERLLPFVFDEVVQEVDKEAKIIKVDWDPGF