Protein Info for MIT1002_01276 in Alteromonas macleodii MIT1002

Annotation: Stalked cell differentiation-controlling protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 655 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 469 to 487 (19 residues), see Phobius details TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 495 to 651 (157 residues), 127.5 bits, see alignment E=2.1e-41 PF00990: GGDEF" amino acids 497 to 648 (152 residues), 118 bits, see alignment E=1.8e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (655 amino acids)

>MIT1002_01276 Stalked cell differentiation-controlling protein (Alteromonas macleodii MIT1002)
MSAWFRFTRLMICLLIPAIACFTVFAQSIDIPNALRLKKLDNYSHIAATAIYHWNTPSEV
SNENIIAMLTSAGLQNDTQSEGVIFRHLLATYTANDADSPRIPLFVKEPLLDKHWQELKT
IKPELFAAAKAYYIYARAVNDFKGSDHRVNFSVPELRRLQREALETGSRRATAIASIWLA
MELTLANPIQAINEIEYALPHLPRYSSDKSLENALSNVIAHDWLRGAYLELFVPSRAFFH
SKEIIESKTQDNNTMVKTWAYFSAIDSLLIQNKFEEALVMSNDALEHLSTVTSVHEKLLT
FVQRLRVVVFQKSEGYELLAQEVMTQIRQLDTTEVKQRTEELSAYADALYAAVLNDDAKF
QDSLQRYRNIVLATIPNSGFKEKIKLRLERELSRLYDASGDYEKAYEHSKTYNRLLVEKN
TEQFKLSNSSFTDGIAKDIELARYRQKELTVLRSEKDGLSTDKEAMKTTIFALIITILII
LALWLWISKRQSDLLAERDSLTGALTRRAMLNSLKKALKGNKASCIALLDVDNFKKINDK
YGHVVGDEVLTTFTQIIKNRIRKSDKLCRYGGEEFLIYFSDSDQRSAKRILDELNFALSR
QKHWSNTKEMFSVSFSSGLLDVNGETNLDTIIKMCDELLYKAKREGRARVASFPI