Protein Info for MIT1002_01210 in Alteromonas macleodii MIT1002

Annotation: putative membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 145 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 53 to 73 (21 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 112 to 136 (25 residues), see Phobius details PF09945: DUF2177" amino acids 13 to 134 (122 residues), 112.8 bits, see alignment E=5.6e-37

Best Hits

KEGG orthology group: None (inferred from 96% identity to amc:MADE_02774)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (145 amino acids)

>MIT1002_01210 putative membrane protein (Alteromonas macleodii MIT1002)
MLSNIIRFAKNIVVSLIAIFVCFGVLDFLWLGVIADGWYQSEMAPLLRSQFITWPWVVFY
LMYGCVVFVLAVVANRDKSLLYAGIDGALLGLASYGAYNLTAYSIIEGFTLFIMLIDWAW
GTCLTSASAMAGWLGFQMVKGKSSE