Protein Info for MIT1002_01191 in Alteromonas macleodii MIT1002

Annotation: Carbon starvation protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 497 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 75 to 96 (22 residues), see Phobius details amino acids 126 to 148 (23 residues), see Phobius details amino acids 160 to 182 (23 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 236 to 253 (18 residues), see Phobius details amino acids 273 to 297 (25 residues), see Phobius details amino acids 317 to 342 (26 residues), see Phobius details amino acids 370 to 391 (22 residues), see Phobius details amino acids 397 to 415 (19 residues), see Phobius details amino acids 422 to 440 (19 residues), see Phobius details amino acids 446 to 470 (25 residues), see Phobius details PF02554: CstA" amino acids 1 to 144 (144 residues), 120 bits, see alignment E=6.4e-39 amino acids 160 to 293 (134 residues), 59.1 bits, see alignment E=1.8e-20 amino acids 330 to 436 (107 residues), 27.1 bits, see alignment E=9.3e-11

Best Hits

KEGG orthology group: None (inferred from 80% identity to vpa:VP0540)

Predicted SEED Role

"Carbon starvation protein A"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (497 amino acids)

>MIT1002_01191 Carbon starvation protein A (Alteromonas macleodii MIT1002)
MILFLICVAALIAGYFIYGAFVEKVFGVTPARPTPAHSQKDGVDFVPMSTPKVYLVQLLN
IAGVGPIFGPIMGALYGPAAMLWIVLGCIFAGAVHDYFSGMLSVRNNGESVPSLSGRYLG
RGAKHFMNLFAIVLLLLVGVVFVSAPAGMITNLVNDQTSWHVEVGTMVAIIFAYYILATI
VPVDKIIGRFYPFFGALLIFMSVGLLAAASYSDQHSILSQFTASDMLTNLNPNDMPLWPA
LFITIACGAISGFHATQSPLMARCMENEKNGRFVFFGAMIGEGVIALIWCAIALSYFDNL
EGLSAAITNGGPGNVVYASSFGLLGVVGGVLAFLGVVILPITSGDTAFRSSRLIMAEYFN
VEQKGIRNRLFMAAPLFVLGGILTQVDFGVIWRYFGFANQATAVMMLWTASAYLLRHNKL
HWITTVPAIFMTAVCVTFILNNDTLGFGMAMNVSTTIGLIASLITTVYVIRISKGKGEAP
LEPSSVNVEKPSQPVDA