Protein Info for MIT1002_01108 in Alteromonas macleodii MIT1002

Annotation: Sporulation initiation inhibitor protein soj

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF06564: CBP_BcsQ" amino acids 1 to 152 (152 residues), 33.7 bits, see alignment E=9.6e-12 PF13614: AAA_31" amino acids 1 to 180 (180 residues), 163.4 bits, see alignment E=1.9e-51 PF10609: ParA" amino acids 3 to 172 (170 residues), 36.4 bits, see alignment E=1.4e-12 PF09140: MipZ" amino acids 5 to 53 (49 residues), 23.4 bits, see alignment 1.2e-08 PF01656: CbiA" amino acids 5 to 230 (226 residues), 75.4 bits, see alignment E=1.4e-24 PF02374: ArsA_ATPase" amino acids 8 to 132 (125 residues), 42.6 bits, see alignment E=1.7e-14

Best Hits

KEGG orthology group: K03496, chromosome partitioning protein (inferred from 96% identity to amc:MADE_02865)

Predicted SEED Role

"Chromosome (plasmid) partitioning protein ParA" in subsystem Bacterial Cytoskeleton or Plasmid replication or Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>MIT1002_01108 Sporulation initiation inhibitor protein soj (Alteromonas macleodii MIT1002)
MKVWTVANQKGGVGKTTTTVSLGGLLAQQGKRVLMIDTDPHASLSYYFGIDAEASSHSVY
DIFIKSNDITADNVMDCLGPTKLDNLYVLPATMALATLDRTMGSEQGMGLVLKKALAKIA
GEFDVAIIDCPPVLGVLMVNALAACDKVIVPTQTEYLALKGLDRMIRTMEIMGRSLDKSF
DTVIIPTMFDKRTNAALASRKRLMNDYGERVWEGVIPVDTHFRDASLVQLPISAAYPKTR
GVSAYEKLLAVLEK