Protein Info for MIT1002_01078 in Alteromonas macleodii MIT1002

Annotation: UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 TIGR03588: UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine transaminase" amino acids 1 to 382 (382 residues), 543.2 bits, see alignment E=1.6e-167 PF01041: DegT_DnrJ_EryC1" amino acids 8 to 380 (373 residues), 365.4 bits, see alignment E=3.6e-113 PF00155: Aminotran_1_2" amino acids 32 to 165 (134 residues), 23.8 bits, see alignment E=2.5e-09

Best Hits

KEGG orthology group: None (inferred from 60% identity to amc:MADE_02897)

Predicted SEED Role

"Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>MIT1002_01078 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase (Alteromonas macleodii MIT1002)
MIPYGKQHIDDNDIEAVTSALRSDWLTQGPNVPKFEAALTDYCNSSHAVAVNSATSALHI
ACLALGVQTGDTVWTSPNSFVASANCAIYCGADVDFVDISLTTGNICISALRDKLSFAER
HGKLPKVIIPVHFAGQSCDMQKLSELVKKYNVKVIEDASHAVGAKYNDIPVGSCQYSDVC
VFSFHPVKIITTLEGGMALTNNAELANKMRLLRSHGITNNLLEMTSKVHGPWYYEQHQLG
FNYRMNDIEAALGLSQLNKLDRLVQQRNKLADMYNRLFGKHKQILPLNIKEYSYSSYHLY
VVRIKGLEQIQHAHIINALREQGIFAHLHYIPIYKQPYFSAKYPNIEPLPNTEKYYSEAV
TLPIYPEMDESHIAYIVNTLIALVDRENNIVNVQDNIE