Protein Info for MIT1002_01005 in Alteromonas macleodii MIT1002

Annotation: Elongation factor Ts

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 TIGR00116: translation elongation factor Ts" amino acids 1 to 285 (285 residues), 375 bits, see alignment E=1.2e-116 PF00889: EF_TS" amino acids 70 to 268 (199 residues), 238.1 bits, see alignment E=3.7e-75

Best Hits

Swiss-Prot: 98% identical to EFTS_ALTMD: Elongation factor Ts (tsf) from Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype)

KEGG orthology group: K02357, elongation factor Ts (inferred from 98% identity to amc:MADE_01373)

Predicted SEED Role

"Translation elongation factor Ts"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>MIT1002_01005 Elongation factor Ts (Alteromonas macleodii MIT1002)
MAVTAALVKELRERTGAGMLDCKKALVETDGDIELAIENMRKSGQAKAAKKAGRIAAEGV
ILTKVEAGRATMLELNCETDFVARDEGFLKFGNELLEVAAANNINDIEALNDAELNGSKV
SEVRDALVAKIGENISPRRVINVEGDTLGAYVHGSRIGVISILTGGDEELAKDVAMHVAA
ASPQFVKPENVPAEVVEKEKEIQIEIAIQSGKPADIAEKMVAGRMKKFTGEVSLTGQPFV
KDPSISVAELLKNNSADVINFVRFEVGEGIEKKTEDFAAEVAAQMAAAKK